C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git>java -jar org.hl7.fhir.igpublisher.jar -ig C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git\C-CDA_on_FHIR.json
FHIR Implementation Guide Publisher (v3.1.0-12194, gen-code v3.1.0-12192) @ Tuesday, July 11, 2017 3:21:16 PM
Detected Java version: 1.8.0_121 from C:\Program Files\Java\jre1.8.0_121 on amd64 (64bit). 3616MB available
Load Configuration from C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git\C-CDA_on_FHIR.json (00.0000sec)
File log: C:\Users\SEAN~1.MCI\AppData\Local\Temp\fhir-ig-publisher-tmp.log
Root directory: C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git                    (00.0042sec)
Terminology Cache is at C:\Users\sean.mcilvenna\fhircache. 6 files in cache      (00.0953sec)
Load Validation Pack (internal)                                                  (00.0955sec)
Definitions 3.1.0-12194                                                          (13.0479sec)
Connect to Terminology Server at http://tx.fhir.org/r3                           (13.0480sec)
Load USCore (http://hl7.org/fhir/us/core/) from http://hl7.org/fhir/us/core/     (15.0647sec)
Version mismatch. This IG is version 3.1.0, while the IG 'USCore' is from version 3.0.0. Will try to run anyway) (17.0618sec)
Initialization complete                                                          (18.0791sec)
Load Content                                                                     (18.0792sec)
Processing Conformance Resources                                                 (22.0175sec)
Generating Narratives                                                            (28.0277sec)
Validating Resources                                                             (32.0507sec)
Generating Outputs in C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git\output       (42.0644sec)
Exception generating resource C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git\resources\structuredefinition\CCDA-on-FHIR-Care-Plan::StructureDefinition/CCDA-on-FHIR-Care-Plan: not the right kind of structure to generate schematrons for (48.0154sec)
org.hl7.fhir.exceptions.DefinitionException: not the right kind of structure to generate schematrons for
        at org.hl7.fhir.r4.conformance.ProfileUtilities.generateSchematrons(ProfileUtilities.java:3003)
        at org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:3488)
        at org.hl7.fhir.igtools.publisher.Publisher.generateOutputs(Publisher.java:3143)
        at org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:2178)
        at org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:364)
        at org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:323)
        at org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:3829)
   org.hl7.fhir.r4.conformance.ProfileUtilities.generateSchematrons(ProfileUtilities.java:3003) (48.0189sec)
   org.hl7.fhir.igtools.publisher.Publisher.generateOutputsStructureDefinition(Publisher.java:3488) (48.0191sec)
   org.hl7.fhir.igtools.publisher.Publisher.generateOutputs(Publisher.java:3143) (48.0193sec)
   org.hl7.fhir.igtools.publisher.Publisher.generate(Publisher.java:2178)        (48.0194sec)
   org.hl7.fhir.igtools.publisher.Publisher.createIg(Publisher.java:364)         (48.0195sec)
   org.hl7.fhir.igtools.publisher.Publisher.execute(Publisher.java:323)          (48.0197sec)
   org.hl7.fhir.igtools.publisher.Publisher.main(Publisher.java:3829)            (48.0199sec)
Generating Summary Outputs                                                       (00:01:02.0897sec)
Jekyll: Source: C:/Users/sean.mcilvenna/Code/ccda-on-fhir-git/temp               (00:01:06.0980sec)
Jekyll: Generating...                                                            (00:01:06.0982sec)
Jekyll: done in 12.865 seconds.                                                  (00:01:19.0845sec)
Checking Output HTML                                                             (00:01:25.0358sec)
found 513 files
  ... 513 html files, 1 page invalid xhtml (0%)                                  (00:02:31.0778sec)
  ... 672685 links, 172 broken link (0%)                                         (00:02:31.0782sec)
Build final .zip                                                                 (00:02:31.0785sec)
Finished. 00:02:18.0306. Validation output in C:\Users\sean.mcilvenna\Code\ccda-on-fhir-git\output\qa.html
Errors: 144  Warnings: 52  Info: 1 (00:02:40.0964sec)
Done                                                                             (00:02:40.0967sec)